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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4395627_4399715_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4395627 - 4399715
Intron Length:
4089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCTCTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
AACACATTAACA
Flanking Amino Acid:
FLKVPDQGAAGVRRQTTNRP
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
69
0.43
1
72.1
32.2
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
58.9
0.28
1.7
65.45
40.2

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830
ENSAPLT00000035815
4393901 - 4457868
63968