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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4398821_4399715_R

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4398821 - 4399715
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTGAGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
CTTGCACTAATA
Flanking Amino Acid:
FLKVPDQGAAG*
Intron Amino Acid Position:
1037

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
58.4
0.19
1.2
54
44.6
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
48.7
-0.1
2
64.96
41.7

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035163
4398637 - 4482054
83418