About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4402876_4404462_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4402876 - 4404462
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
GTGCTTATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTGCTTATAT
Flanking Amino Acid:
QRKLPLKFSNTLEVKLKKES
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.2
80.1
30.7
Major BPS
100
1.24
0.5
100
0
Major PPT
65
0.34
1
64
41.5
Minor 5ss
37.8
-1.4
3
48.3
41.3
Minor BPS
49.6
0.05
2.1
71.51
45.2

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035815
4393901 - 4457868
63968
ENSAPLT00000035163
4398637 - 4482054
83418
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830