Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4409297_4409733_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4409297 - 4409733

Intron Length:

437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTA

5'SS Class:

strong_major

3'SS Sequence:

AATTCTGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATATTTTCAAAC

Flanking Amino Acid:

TVTKYDRRFKSVKRDLILTP

Intron Amino Acid Position:

788

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

84.1

30.2

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

77.5

0.62

73.8

40.7

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

52.6

0.06

1.6

62.91

36.1

Associated Gene:

Gene:

MYO1E

Ensembl Gene ID:

ENSAPLG00000010820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035163

4398637 - 4482054

83418

ENSAPLT00000019857

4394713 - 4482054

87342

ENSAPLT00000011335

4394713 - 4457991

63279

ENSAPLT00000046452

4393901 - 4483730

89830

ENSAPLT00000035815

4393901 - 4457868

63968