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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4409904_4410393_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4409904 - 4410393
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
RKKYVQMREEASDLLLNKKE
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.4
0.59
1.1
80.4
36.2
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035815
4393901 - 4457868
63968
ENSAPLT00000035163
4398637 - 4482054
83418
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830