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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4417010_4420726_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4417010 - 4420726
Intron Length:
3717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAGATTTTAAAT
Flanking Amino Acid:
TKKPRDWEESRVKHQVEYLG
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.6
0.64
0.9
72.5
37.8
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
52
0.14
1.5
62.32
41.8

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035815
4393901 - 4457868
63968
ENSAPLT00000035163
4398637 - 4482054
83418
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830