About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4422064_4422657_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4422064 - 4422657
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
TATTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATTC
Flanking Amino Acid:
DLIELMQSSDLPFIKALFPE
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
63.8
42
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.5
0.78
0.7
77.6
36.4
Minor 5ss
36.6
-1.5
3
47.6
42.5
Minor BPS
57.3
0.21
2
73.5
38.4

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830
ENSAPLT00000035815
4393901 - 4457868
63968
ENSAPLT00000035163
4398637 - 4482054
83418
ENSAPLT00000019857
4394713 - 4482054
87342