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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4422744_4423469_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4422744 - 4423469
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTATGG
5'SS Class:
major
3'SS Sequence:
CACCTTGGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTACCACAAAC
Flanking Amino Acid:
GFIIHHYAGKVSYDMDGFCE
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.2
43.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
61
0.25
1
52.6
41.2
Minor 5ss
36
-1.6
3.3
47.6
47.8
Minor BPS
47.3
-0.2
2
62.17
42.4

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000011335
4394713 - 4457991
63279
ENSAPLT00000046452
4393901 - 4483730
89830
ENSAPLT00000035815
4393901 - 4457868
63968
ENSAPLT00000035163
4398637 - 4482054
83418