Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4423638_4424282_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4423638 - 4424282

Intron Length:

645

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TCAAATGCATTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCTCAA

U12 Branch Point Sequence:

TTTTCCTCAAAT

Flanking Amino Acid:

IVCDLIENKVNPPGIMSILD

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

88.8

Major BPS

73.1

0.58

73.8

32.3

Major PPT

54.6

0.1

52.2

42.1

Minor 5ss

37.5

-1.4

2.8

48.3

41.8

Minor BPS

77.1

0.93

1.6

94.15

32.8

Associated Gene:

Gene:

MYO1E

Ensembl Gene ID:

ENSAPLG00000010820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046452

4393901 - 4483730

89830

ENSAPLT00000011335

4394713 - 4457991

63279

ENSAPLT00000035815

4393901 - 4457868

63968

ENSAPLT00000035163

4398637 - 4482054

83418

ENSAPLT00000019857

4394713 - 4482054

87342