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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4445963_4457778_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4445963 - 4457778
Intron Length:
11816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
TATTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATG
Flanking Amino Acid:
GQALVIPGRKGSKGHYRYHW
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
61.6
0.22
1.3
57.84
38.6

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035815
4393901 - 4457868
63968