About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4445963_4481954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4445963 - 4481954
Intron Length:
35992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATG
Flanking Amino Acid:
GRLYSVMFPEGSKGHYRYHW
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
61.6
0.22
1.3
57.84
38.6

Associated Gene:

Gene:
MYO1E
Ensembl Gene ID:
ENSAPLG00000010820
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035163
4398637 - 4482054
83418
ENSAPLT00000019857
4394713 - 4482054
87342
ENSAPLT00000046452
4393901 - 4483730
89830