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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4485515_4485642_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4485515 - 4485642
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
68.4
42.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
35.3
-1.7
3
45.3
42.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245