Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4486039_4486660_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4486039 - 4486660

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTCACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTGTTTTAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.9

78.8

35.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.1

0.61

0.9

70.7

39.9

Minor 5ss

35.6

-1.6

2.9

42.3

Minor BPS

69.8

0.7

1.3

81.14

35.2

Associated Gene:

Gene:

FAM81A

Ensembl Gene ID:

ENSAPLG00000010722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011166

4485643 - 4499396

13754