Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4486039_4487395_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4486039 - 4487395

Intron Length:

1357

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTACC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

ACTTTTTCAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.9

78.8

35.5

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

77.9

0.63

0.9

73.9

34.9

Minor 5ss

35.6

-1.6

2.9

42.3

Minor BPS

62.1

0.38

1.5

69.17

37.5

Associated Gene:

Gene:

FAM81A

Ensembl Gene ID:

ENSAPLG00000010722

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029408

4485152 - 4499396

14245

ENSAPLT00000017552

4485152 - 4499396

14245