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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4488626_4488705_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4488626 - 4488705
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTTCTTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTCTTCACT
Flanking Amino Acid:
HLFTCRSGPSLRVRNIPLHS
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
80
0.75
1
78.6
31
Major PPT
75.9
0.58
0.8
70.9
34.7
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
71.2
0.75
1.7
86.99
39.2

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000011166
4485643 - 4499396
13754