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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4488980_4489724_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4488980 - 4489724
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GAATACTTCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ACATACTGAATT
Flanking Amino Acid:
IVRQLNRDIEMLQEQIRVRD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.1
37.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
61.8
0.27
1
54.9
40.5
Minor 5ss
38.5
-1.3
3
48.8
47.4
Minor BPS
55.7
0.26
1.6
69.44
41.2

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245
ENSAPLT00000011166
4485643 - 4499396
13754