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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4489844_4496481_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4489844 - 4496481
Intron Length:
6638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTTTATTCAAAC
Flanking Amino Acid:
GLGDLRGRVARCDAGLARLS
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.4
0.55
1
70.9
38.9
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
50.9
0.01
1.8
66.07
38.9

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011166
4485643 - 4499396
13754
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245