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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4496612_4497771_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4496612 - 4497771
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TGAATTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAATTCTGAATT
Flanking Amino Acid:
ESKIKEAEIQISHLLSRVEQ
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.2
0.52
1
69.5
45.7
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
63
0.49
1.4
73.36
37.1

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011166
4485643 - 4499396
13754
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245