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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4497879_4498155_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4497879 - 4498155
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTATGCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATCTCCTAATT
Flanking Amino Acid:
STQQLHLLDTKLKNAIEELS
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.3
0.55
0.9
70.8
40.3
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
61.9
0.45
1.6
79.28
36.4

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245
ENSAPLT00000011166
4485643 - 4499396
13754