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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4498292_4498641_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4498292 - 4498641
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCCTGGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
AAACCATTAAAA
Flanking Amino Acid:
QLSLTFKETTEISERAIEMK
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
74.3
0.55
0.9
65.1
41.2
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
51.8
0.05
1.7
60.96
37.4

Associated Gene:

Gene:
FAM81A
Ensembl Gene ID:
ENSAPLG00000010722
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029408
4485152 - 4499396
14245
ENSAPLT00000017552
4485152 - 4499396
14245
ENSAPLT00000011166
4485643 - 4499396
13754