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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4507405_4508354_F

Intron Information:

Intron Rank:
140453
Intron Class:
major
Intron Phase:
Intron Coordinates:
4507405 - 4508354
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCCTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82
0.72
0.8
80.6
31.3
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
45.5
-0.2
2.4
68.07
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025583
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031183
4505289 - 4511050
5762