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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4508772_4509678_F

Intron Information:

Intron Rank:
140454
Intron Class:
major
Intron Phase:
Intron Coordinates:
4508772 - 4509678
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.5
0.78
0.8
85.3
28.3
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025583
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031183
4505289 - 4511050
5762