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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4509775_4509878_F

Intron Information:

Intron Rank:
140455
Intron Class:
major
Intron Phase:
Intron Coordinates:
4509775 - 4509878
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTTCTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.1
0.74
0.9
80.9
36.4
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
69.1
0.68
1.7
88.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025583
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031183
4505289 - 4511050
5762