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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4509907_4510015_F

Intron Information:

Intron Rank:
140456
Intron Class:
major
Intron Phase:
Intron Coordinates:
4509907 - 4510015
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCCT
5'SS Class:
major
3'SS Sequence:
CTTTTCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGACTATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
69.9
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.7
82.2
28
Minor 5ss
43
-0.8
2.8
60.4
43.9
Minor BPS
48.9
-0.1
1.7
59.94
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025583
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031183
4505289 - 4511050
5762