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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4510051_4510886_F

Intron Information:

Intron Rank:
140457
Intron Class:
major
Intron Phase:
Intron Coordinates:
4510051 - 4510886
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCAAG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
70.9
40.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
87.4
0.84
0.7
83.5
31.6
Minor 5ss
41.2
-1
2.9
53.3
43.9
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025583
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031183
4505289 - 4511050
5762