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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4527808_4528824_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4527808 - 4528824
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCGTGCCCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCTCTATTT
Flanking Amino Acid:
WLLAAAGLVRESLQGEFQRK
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
52.7
0.06
1
50.8
31.9
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
56.1
0.27
1.9
78.83
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010902
4527753 - 4566434
38682