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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4549006_4553064_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4549006 - 4553064
Intron Length:
4059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTGTATATTT
Flanking Amino Acid:
VLTTNIWLQMYWTDHYLQWN
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77
0.61
0.9
74.9
39.5
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
45.8
-0.2
2.2
69.14
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010902
4527753 - 4566434
38682