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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4561302_4562707_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4561302 - 4562707
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTATGCTTATCT
Flanking Amino Acid:
PADSGEKISLGITVLLSLTV
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.9
0.7
0.9
77.2
36.8
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
63.9
0.52
2
84.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010902
4527753 - 4566434
38682