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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4562795_4563715_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4562795 - 4563715
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
ATCACTATAATT
Flanking Amino Acid:
PATSDSVPLIAQYFASTMII
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.5
36.8
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
86.4
0.82
0.8
80.8
36.4
Minor 5ss
43.6
-0.7
2.9
56.2
48
Minor BPS
55.8
0.26
1.6
71.81
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010902
4527753 - 4566434
38682