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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4563826_4565915_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4563826 - 4565915
Intron Length:
2090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTCTCAGTAATT
Flanking Amino Acid:
DPDGGKMPKWTRIILLNWCA
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.5
36.8
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
73.4
0.53
0.9
64.1
42
Minor 5ss
42.2
-0.9
3.4
56.2
48
Minor BPS
56
0.27
2.3
80.74
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010434
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010902
4527753 - 4566434
38682