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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4649930_4651939_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4649930 - 4651939
Intron Length:
2010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGAACT
Flanking Amino Acid:
SKWFHTEWSTCSKSCEGGFR
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
68.6
0.66
1.7
86.41
39.1

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000010853
4647690 - 4755212
107523
ENSAPLT00000048063
4648268 - 4927851
279584
ENSAPLT00000039851
4648268 - 4930115
281848