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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4652120_4654673_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4652120 - 4654673
Intron Length:
2554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTGCTCTGATA
Flanking Amino Acid:
VEWFAGSWTQCSTECGSGTQ
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
79
0.72
1
69
38.9
Major PPT
71
0.47
1
64.7
40.5
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
49.2
-0
1.7
62.1
38.9

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039851
4648268 - 4930115
281848
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000010853
4647690 - 4755212
107523
ENSAPLT00000048063
4648268 - 4927851
279584