Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4654848_4663754_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4654848 - 4663754

Intron Length:

8907

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTGAA

U12 Branch Point Sequence:

GACTAGTGAACA

Flanking Amino Acid:

SWFLTEWSDRCSAECGDGVR

Intron Amino Acid Position:

435

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

73.4

43.3

Major BPS

64.3

0.35

1.2

55.4

Major PPT

77.5

0.62

0.8

69.3

36.9

Minor 5ss

36.2

-1.6

3.5

48.3

47.3

Minor BPS

44.5

-0.4

2.2

55.48

42.7

Associated Gene:

Gene:

THSD4

Ensembl Gene ID:

ENSAPLG00000010423

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020477

4647690 - 4907279

259590

ENSAPLT00000010853

4647690 - 4755212

107523

ENSAPLT00000048063

4648268 - 4927851

279584

ENSAPLT00000039851

4648268 - 4930115

281848