About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4663929_4666386_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4663929 - 4666386
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
CCATTTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GAGTCCTGATAC
Flanking Amino Acid:
EWQIRTEWTSCSVPCGVGQR
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.6
0.62
0.9
71.4
38.2
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
47.3
-0.2
1.8
55.05
42.2

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039851
4648268 - 4930115
281848
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000010853
4647690 - 4755212
107523
ENSAPLT00000048063
4648268 - 4927851
279584