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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4670061_4671002_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4670061 - 4671002
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCCCCATCA
Flanking Amino Acid:
SPQLLAHRRPGEPLNGQLEM
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
70.9
0.47
0.8
65.5
28.8
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
53.9
0.12
2.1
76.79
40

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000010853
4647690 - 4755212
107523
ENSAPLT00000048063
4648268 - 4927851
279584
ENSAPLT00000039851
4648268 - 4930115
281848