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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4674443_4705061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4674443 - 4705061
Intron Length:
30619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTATCCTCTACA
Flanking Amino Acid:
TEMSKSNNYLALRSRSGRSI
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
79
0.72
1
69
38.9
Major PPT
79.3
0.66
0.8
72.8
31.8
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
56.5
0.2
1.9
68.6
43.3

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000010853
4647690 - 4755212
107523
ENSAPLT00000048063
4648268 - 4927851
279584
ENSAPLT00000039851
4648268 - 4930115
281848