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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4805842_4855649_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4805842 - 4855649
Intron Length:
49808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACTTTCTGACAG
Flanking Amino Acid:
RFYEWEPFAEVKGSQKCELN
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
91.4
0.93
0.6
84.6
30.3
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
46.1
-0.4
1.8
51.31
43

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039851
4648268 - 4930115
281848
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000048063
4648268 - 4927851
279584