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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4888014_4903014_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4888014 - 4903014
Intron Length:
15001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
TTGTTCCTAAGT
Flanking Amino Acid:
IPQPSIEHRKVPQRIEEQSD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
76.5
0.6
1
68.9
42
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
58.5
0.34
2
79.96
42.2

Associated Gene:

Gene:
THSD4
Ensembl Gene ID:
ENSAPLG00000010423
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039851
4648268 - 4930115
281848
ENSAPLT00000020477
4647690 - 4907279
259590
ENSAPLT00000048063
4648268 - 4927851
279584