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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4976349_4977381_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4976349 - 4977381
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TTTCTTTCTACA
Flanking Amino Acid:
YRMLSLFGESRMKQFHDLLE
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
49.7
-0
1.8
68.48
37.5

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340