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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4977492_4979651_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4977492 - 4979651
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTCTCAATT
Flanking Amino Acid:
LNLQKINGIEVTQNDTVMAE
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
69.1
0.68
1.5
85.48
34.6

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340