Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4984852_4987788_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4984852 - 4987788

Intron Length:

2937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTTCT

5'SS Class:

major

3'SS Sequence:

ACTTTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATAAT

U12 Branch Point Sequence:

TTTACTATGACT

Flanking Amino Acid:

RESHKQSLIKEKKRLTICNI

Intron Amino Acid Position:

403

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

33.7

Major BPS

75.2

0.63

1.1

74.5

36.6

Major PPT

83.3

0.75

0.9

80.8

36.2

Minor 5ss

-0.1

2.4

68.6

Minor BPS

64.4

0.53

1.6

85.1

34.9

Associated Gene:

Gene:

LRRC49

Ensembl Gene ID:

ENSAPLG00000009920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010357

4971653 - 5016992

45340