About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_4995222_5001157_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4995222 - 5001157
Intron Length:
5936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AAAACTTTAAAC
Flanking Amino Acid:
RLFLSFNNISSFEDILCLAD
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
58.1
0.23
1.4
61.43
36.9

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340