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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5003359_5010562_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5003359 - 5010562
Intron Length:
7204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
ACTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATGTTTATAATT
Flanking Amino Acid:
LDVLDLHGNQISKIENINHL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.3
0.7
0.8
75.8
32
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
58.9
0.36
1.5
74.36
37

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340