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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5010630_5011903_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5010630 - 5011903
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTAAATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CATCATTTAAAT
Flanking Amino Acid:
SLRVLLLGKNRIKKISNLEN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
1
69.7
45.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
53.8
0.2
1.6
69.09
41.2

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340