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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5015414_5016000_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5015414 - 5016000
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAATTACT
5'SS Class:
major
3'SS Sequence:
CGTTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAGACTTCAACC
Flanking Amino Acid:
TASIPDKNKPFEFRINKEQS
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
71.4
38.3
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
81.7
0.71
0.9
75.6
38.3
Minor 5ss
40.6
-1
2.8
58.7
39.2
Minor BPS
53
0.08
1.6
59.22
39.5

Associated Gene:

Gene:
LRRC49
Ensembl Gene ID:
ENSAPLG00000009920
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010357
4971653 - 5016992
45340