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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5020476_5022098_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5020476 - 5022098
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GGCTGTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATTAT
U12 Branch Point Sequence:
ATCCAATTATTT
Flanking Amino Acid:
LKFVSSILNLSGGENDDDFD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
64.6
0.36
1.1
55.7
39.9
Major PPT
74.7
0.56
1
64.8
45.7
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
44.8
-0.3
1.9
62.16
41.7

Associated Gene:

Gene:
LARP6
Ensembl Gene ID:
ENSAPLG00000009914
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010317
5020345 - 5023766
3422