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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5022292_5022692_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5022292 - 5022692
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCATCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TACTGCTTAACC
Flanking Amino Acid:
SVKLLTSFKKVKHLTRDWRT
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
67.8
0.4
1.1
64.4
41.5
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
69.1
0.58
1.8
75.39
41.1

Associated Gene:

Gene:
LARP6
Ensembl Gene ID:
ENSAPLG00000009914
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010317
5020345 - 5023766
3422