Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5027405_5027777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5027405 - 5027777

Intron Length:

373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCCCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TTTGTTTTCCCT

Flanking Amino Acid:

PLVRQNRIPIELCMTSNIKT

Intron Amino Acid Position:

259

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

78.7

29.9

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

79.1

0.66

0.7

78.2

30.7

Minor 5ss

32.9

-1.9

2.9

37.3

41.2

Minor BPS

-0.6

3.6

74.22

43.6

Associated Gene:

Gene:

ADAL

Ensembl Gene ID:

ENSAPLG00000009775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010210

5026587 - 5033754

7168