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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5027917_5028850_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5027917 - 5028850
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATATCCTCACCA
Flanking Amino Acid:
GLKLALHLSEIPNQEEETKV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.2
0.41
1
60.4
40.7
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
58.9
0.27
1.8
71.29
40.5

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168