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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5028932_5029629_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5028932 - 5029629
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTGTCTTCAAG
Flanking Amino Acid:
VGLDLSGDPTAGRGQDFLEP
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
81.2
33.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
77.6
0.62
1
75.9
38.4
Minor 5ss
49
-0.1
2.8
77.2
37.5
Minor BPS
49.8
-0.1
2.1
63.72
44.3

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168